Past seminars
2025
2026/02/13
Yukiko Himeno, The University of Osaka, WPI-PRIMe
Multi-scale Modeling of the Heart, from Molecular Mechanisms to Organ Function
2026/01/23
Ai Shinobu, The University of Osaka, WPI-PRIMe
Toward FAIR (Findable, Accessible, Interoperable, Reusable) Data in Molecular Dynamics
2025/12/24
Shushma Nagaraja Grellscheld, University of Bergen, Norway, and Durham University
FlickerPRINT for Harnessing Shape Fluctuations to Probe the Mechanics of Biomolecular Condensates
2025/11/14
Thibault Tubiana, Institute for Integrative Biology of the Cell (I2BC), CEA/CNRS & Université Paris-Saclay, France
Predicting Viral-Host Protein Interactions: Lessons from AlphaFold Successes and Failures
2025/10/10
Shubhra Ghosh Dastidar, Department of Biological Sciences and Bioinformatics Centre Bose Institute, India
Simulating the Jiggling Atoms of 'Life': Is Any Extra Mile of Understanding Earned?
2025/09/12
Gert-Jan Bekker, Institute for Protein Research (IPR), The University of Osaka
Servers on the cheap: Build your own DIY MD Server for simulations & analysis
2025/08/26
Joshua Lam, University of Manchester, UK and A*STAR, Singapore
The Polarisation Effect: Small Tweaks, Big Effects in Classic Molecular Simulations
2025/08/08
Vikas Pandey, WPI-PRIMe, The University of Osaka
How Multivalency, Linkers, and Competitive Binding Govern Postsynaptic Condensate Architecture
2025/07/18
Akira Imamoto, The Ben May Department for Cancer Research, The University of Chicago,
Analysis of interactions between the two candidates for 22q11.2 deletion syndrome in fibroblasts
2025/06/20
Sandhya Tiwari, Institute for Protein Research (IPR), The University of Osaka
Analyzing protein-protein coupled motions from whole-complex dynamics
2025/05/30
Yuri Tulchinsky, The Hebrew University of Jerusalem, Israel
Genie in a Bottle – Formation and Reactivity of an Elusive Monomeric Mn(IV)-Oxo Species Inside a Cavitand Pore
2024
2025/03/26
Duy Phuoc Tran, School of Life Science and Technology, Institute of Science Tokyo
Unveiling the biological rare events using Parallel Cascade Selection Molecular Dynamics Simulation
2025/03/17
Gert-Jan Bekker, Institute for Protein Research (IPR), Osaka University
Practical tools for preparing and running MD simulations using GROMACS
2025/03/03
Marco Ruscone, Barcelona Supercomputing Center, Spain
Multiscale Modeling in Cancer Research: Integrating Spatial Dynamics and Intracellular Regulation with Agent-Based and Boolean Network Approaches * WPI-PRIMe Omnibus Seminar [11]
2025/02/26
Marco Ruscone, Barcelona Supercomputing Center, Spain
Computational Biology Across Scales: From Pathway Modelling Tools to Cell-Level Simulations
2025/01/24
Ai Shinobu, WPI-PRIMe, Osaka University
Massive Replica Exchange Simulations on Fugaku to Sample Protein Kinase-Inhibitor Binding Landscapes
2025/01/10
Chigusa Kobayashi, RIKEN Center for Computational Science, Operations and Computer Technologies Division and Computational Biophysics Research Team
Introduction to Molecular Dynamics Software, GENESIS
2024/12/20
Eiji Yamamoto, Department of System Design Engineering, Keio University
What can multiscale simulations reveal about biomolecular dynamics?
2024/12/06
Ai Niitsu, RIKEN Center for Biosystems Dynamics Research
De Novo Membrane Peptide and Protein Design: Bridging Classical and Modern Strategies
2024/11/22
Mao Oide, Institute for Protein Research (IPR), Osaka University
What can we learn from SAXS data? An example of complementary analysis with MD simulation
2024/11/01
Gert-Jan Bekker, Institute for Protein Research (IPR), Osaka University
Dynamic docking using Multicanonical MD
2024/09/27
Thibault Tubiana, Institute for Integrative Biology of the Cell (I2BC), CEA/CNRS & Université Paris-Saclay, France
Deciphering viral protein-protein interactions using AlphaFold
2024/09/06
Giovanni Brandani, Dept. of Biophysics, Graduate Sch. of Science, Kyoto University
Integrative Modelling for the Study of Genomic Structure and Function
2024/08/23
Ai Shinobu, WPI-PRIMe, Osaka University
Review of recent MD simulation methods for calculating kinetics of molecular binding events
2024/07/03
George Pantelopulos, Laboratory of Chemical Physics, NIH/NIDDK, USA
Collagen-collagen interactions: Triple helix to helix-helix to fibrils